miRBase entry: stu-MIR395c

Stem-loop stu-MIR395c


Accession
MI0025941
Description
Solanum tuberosum stu-MIR395c precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention stu-MIR395c
(4 sentences)

Sequence

guucccuugaccacuucaugagggcuuaauuacuucauuuuugauguccugCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((..(((((((((...........)))).)))))..))))))).))))))))))..

Structure
--          c       ug     -    uuac 
  guucccuuga cacuuca  agggc uuaa    u
  |||||||||| |||||||  ||||| ||||    u
  CAAGGGGGUU GUGAAGU  uccug aguu    c
CU          U       Cg     u    uuua 


Annotation confidence Not enough data
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Genome context
JH138105.1: 628404-628475 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR395c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR395c

Accession MIMAT0031264
Description Solanum tuberosum stu-miR395c mature miRNA
Sequence 52 - CUGAAGUGUUUGGGGGAACUC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233