miRBase entry: stu-MIR319b

Stem-loop stu-MIR319b


Accession
MI0025951
Description
Solanum tuberosum stu-MIR319b precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

gagcuccuuucaggccaagaccgagggacgaggagcggcaugagcugccuagucaugcauauugguuaaccuuaacaaacauauauauagaguguuaagaauaaccaguugcaugccaagggagcaacuacuuccgcuaacuugucucacuuaUUGGACUGAAGGGAGCUCCU
(((((((((((((.((((......((((((((.(((((.....(((.(((.(.((((((.((((((((..(((((((..(.........)..)))))))..)))))))))))))).).))).)))........)))))..)))))))).....)))).)))))))))))))..

Structure
--             g    gaccga        -g     ---cauga   g   a u      u        ac       aa aua 
  gagcuccuuucag ccaa      gggacgag  agcgg        gcu ccu g caugca auugguua  cuuaaca  c   u
  ||||||||||||| ||||      ||||||||  |||||        ||| ||| | |||||| ||||||||  |||||||  |   a
  CUCGAGGGAAGUC GGUU      cucuguuc  ucgcc        cga gga c guacgu ugaccaau  gaauugu  g   u
UC             A    -auuca        aa     uucaucaa   g   a c      -        aa       ga aua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH137816.1: 2292041-2292213 [-]

Database links

Mature stu-miR319b

Accession MIMAT0031276
Description Solanum tuberosum stu-miR319b mature miRNA
Sequence 154 - UUGGACUGAAGGGAGCUCCU - 173
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233