Stem-loop stu-MIR162a

Accession

MI0025953

Description

Solanum tuberosum stu-MIR162a precursor miRNA

Gene family

MIPF0000127; MIR162_1

Sequence

GGAGGCAGCGGUUCAUCGAUCuguucccugaaaagcgauaaauauagcaacaggaagcgaUCGAUAAACCUCUGCAUCCAG
(((.((((.((((.(((((((.(((.((((....((..........))..)))).)))))))))).)))).)))).)))..

Structure

--   G    C    C       u   c    aaaa  gaua 
  GGA GCAG GGUU AUCGAUC guu ccug    gc    a
  ||| |||| |||| ||||||| ||| ||||    ||     
  CCU CGUC CCAA UAGCUag cga ggac    cg    a
GA   A    U    A       -   a    --aa  auau 

Annotation confidence Not enough data

Genome context

JH137851.1: 1030741-1030821 [+]

Mature stu-miR162a-5p

• Accession: MIMAT0031279
• Description: Solanum tuberosum stu-miR162a-5p mature miRNA
• Sequence: 1 - GGAGGCAGCGGUUCAUCGAUC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR162a-3p

• Accession: MIMAT0031280
• Description: Solanum tuberosum stu-miR162a-3p mature miRNA
• Sequence: 61 - UCGAUAAACCUCUGCAUCCAG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233