miRBase entry: stu-MIR162b

Stem-loop stu-MIR162b


Accession
MI0025954
Description
Solanum tuberosum stu-MIR162b precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
1 open access papers mention stu-MIR162b
(5 sentences)

Sequence

GGAGGCAGCGGUUCAUCGAUCuguucccugaaagcugaauauauaugcaaaaauacagcaaaaggaaccgaUCGAUAAACCUCUGCAUCCAG
(((.((((.((((.(((((((.(((((......((((..................))))....))))).))))))).)))).)))).)))..

Structure
--   G    C    C       u     cugaaa    aauauaua 
  GGA GCAG GGUU AUCGAUC guucc      gcug        u
  ||| |||| |||| ||||||| |||||      ||||         
  CCU CGUC CCAA UAGCUag caagg      cgac        g
GA   A    U    A       c     --aaaa    auaaaaac 


Annotation confidence Not enough data
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Genome context
JH137971.1: 147916-148007 [+]

Database links

Mature stu-miR162b-5p

Accession MIMAT0031281
Description Solanum tuberosum stu-miR162b-5p mature miRNA
Sequence 1 - GGAGGCAGCGGUUCAUCGAUC - 21
Evidence experimental
Illumina [1]

Mature stu-miR162b-3p

Accession MIMAT0031282
Description Solanum tuberosum stu-miR162b-3p mature miRNA
Sequence 72 - UCGAUAAACCUCUGCAUCCAG - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233