Stem-loop sequence stu-MIR172b

Accession

MI0025957 (change log)

Description

Solanum tuberosum miR172b stem-loop

Gene family

MIPF0000035; MIR172

Literature search

10 open access papers mention stu-MIR172b
(50 sentences)

Stem-loop

   --      c           a   -----a      a   a -   gaa 
5'   gcagca caucaagauuc cau      gaaaau ugg c uau   a
     |||||| ||||||||||| |||      |||||| ||| | |||    
3'   cgucgu guaguucuaag gua      uuuuua acc g aua   u
   ua      a           a   cauaag      -   c u   aag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137863.1: 779979-780069 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025957

Mature sequence stu-miR172b-5p

• Accession: MIMAT0031286
• Sequence: 1 - gcagcaccaucaagauucaca - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR172b-3p

• Accession: MIMAT0031287
• Sequence: 71 - agaaucuugaugaugcugcau - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).