miRBase entry: stu-MIR167c

Stem-loop stu-MIR167c


Accession
MI0025967
Description
Solanum tuberosum stu-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention stu-MIR167c
(7 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUAaacuuggccacacuuauaaagaaaaaaaaugggugacuaagguuaGGUCAUGCUCGGACAGCCUCACU
(((.(((((((((((((((((..(((((...(((((((...........))))))).)))))..))))))))))).)).)))).)))..

Structure
--   A    -  -           aa     cca       aaag 
  UGA GCUG CC AGCAUGAUCUA  cuugg   cacuuau    a
  ||| |||| || |||||||||||  |||||   |||||||    a
  ACU CGAC GG UCGUACUGGau  gaauc   gugggua    a
UC   C    A  C           ug     --a       aaaa 


Annotation confidence Not enough data
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Genome context
JH137901.1: 1246472-1246560 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR167c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR167c-5p

Accession MIMAT0031303
Description Solanum tuberosum stu-miR167c-5p mature miRNA
Sequence 1 - UGAAGCUGCCAGCAUGAUCUA - 21
Evidence experimental
Illumina [1]

Mature stu-miR167c-3p

Accession MIMAT0031304
Description Solanum tuberosum stu-miR167c-3p mature miRNA
Sequence 67 - GGUCAUGCUCGGACAGCCUCACU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233