Stem-loop stu-MIR399k

Accession

MI0025973

Description

Solanum tuberosum stu-MIR399k precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399k
(12 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcaauuguauauuucagcugacaCGCCAAAGGAGAGCUGCCCUG
((((..((((((.(((((.((((.(((.......))).)).)).))))).))))))..))))..

Structure

--    UA      A     A  -  a   ua 
  GGGC  CUCUCU UUGGC UG ca uug  u
  ||||  |||||| ||||| || || |||  a
  CCCG  GAGAGG AACCG ac gu gac  u
GU    UC      A     C  a  c   uu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1326953-1327016 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from stu-MIR399k

Mature stu-miR399k-5p

• Accession: MIMAT0031314
• Description: Solanum tuberosum stu-miR399k-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399k-3p

• Accession: MIMAT0031315
• Description: Solanum tuberosum stu-miR399k-3p mature miRNA
• Sequence: 44 - CGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233