Stem-loop stu-MIR399m

Accession

MI0025975

Description

Solanum tuberosum stu-MIR399m precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399m
(15 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcauuuguauauuucagcugacaCGCCAAAGGAGAGCUGCCCUG
((((..((((((.(((((.((((.(((.......))).)).)).))))).))))))..))))..

Structure

--    UA      A     A  -  u   ua 
  GGGC  CUCUCU UUGGC UG ca uug  u
  ||||  |||||| ||||| || || |||  a
  CCCG  GAGAGG AACCG ac gu gac  u
GU    UC      A     C  a  c   uu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1343553-1343616 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from stu-MIR399m

Mature stu-miR399m-5p

• Accession: MIMAT0031318
• Description: Solanum tuberosum stu-miR399m-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399m-3p

• Accession: MIMAT0031319
• Description: Solanum tuberosum stu-miR399m-3p mature miRNA
• Sequence: 44 - CGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233