miRBase entry: stu-MIR477b

Stem-loop stu-MIR477b


Accession
MI0025980
Description
Solanum tuberosum stu-MIR477b precursor miRNA
Gene family
MIPF0000216; MIR477


Sequence

ACUCUCCCUCAAAGGCUUCUGgcuuaaaaugccuuuugugcuaaugcuaGAGGUCUUUCGAGUGAGAGUGA
((((((.((((((((((((((((.......(((....).))....))))))))))))).))).))))))..

Structure
--      C   -             uuaaaau  - u 
  ACUCUC CUC AAAGGCUUCUGgc       gc c u
  |||||| ||| |||||||||||||       || |  
  UGAGAG GAG UUUCUGGAGaucg       cg g u
AG      U   C             ---uaau  u u 


Annotation confidence Not enough data
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Genome context
JH137800.1: 3232231-3232301 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR477b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR477b-5p

Accession MIMAT0031328
Description Solanum tuberosum stu-miR477b-5p mature miRNA
Sequence 1 - ACUCUCCCUCAAAGGCUUCUG - 21
Evidence experimental
Illumina [1]

Mature stu-miR477b-3p

Accession MIMAT0031329
Description Solanum tuberosum stu-miR477b-3p mature miRNA
Sequence 50 - GAGGUCUUUCGAGUGAGAGUGA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233