miRBase entry: stu-MIR398a

Stem-loop stu-MIR398a


Accession
MI0025982
Description
Solanum tuberosum stu-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
4 open access papers mention stu-MIR398a
(4 sentences)

Sequence

GGGUUGAUUUGAGAACAUAUGuaugggcauauuuuguuucuaacaauuuauuguuuauaaaugugacacaUAUGUUCUCAGGUCGCCCCUG
(((.(((((((((((((((((((((((((((..(((((...)))))..)).))))))).........)))))))))))))))))).)))..

Structure
--   U                  ---------       -  uu     u 
  GGG UGAUUUGAGAACAUAUGu         augggca ua  uuguu  
  ||| ||||||||||||||||||         ||||||| ||  ||||| c
  CCC GCUGGACUCUUGUAUaca         uauuugu au  aacaa  
GU   C                  caguguaaa       u  uu     u 


Annotation confidence Not enough data
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Genome context
JH138006.1: 144958-145048 [+]

Database links

Mature stu-miR398a-5p

Accession MIMAT0031331
Description Solanum tuberosum stu-miR398a-5p mature miRNA
Sequence 1 - GGGUUGAUUUGAGAACAUAUG - 21
Evidence experimental
Illumina [1]

Mature stu-miR398a-3p

Accession MIMAT0031332
Description Solanum tuberosum stu-miR398a-3p mature miRNA
Sequence 71 - UAUGUUCUCAGGUCGCCCCUG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233