Stem-loop stu-MIR398b

Accession

MI0025983

Description

Solanum tuberosum stu-MIR398b precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

4 open access papers mention stu-MIR398b
(4 sentences)

Sequence

GAGUGUGCCUUAGAACACAGGUguauuuuggucuacuccuguuuuggacccaaaauaugcUUGUGUUCUCAGGUCACCCCU
..(((.((((.((((((((((((((((((((((((.........)))).)))))))))))))))))))).)))))))....

Structure

--GA   U    U                    -    cuc 
    GUG GCCU AGAACACAGGUguauuuugg ucua   c
    ||| |||| |||||||||||||||||||| ||||   u
    CAC UGGA UCUUGUGUUcguauaaaacc aggu   g
UCCC   -    C                    c    uuu 

Annotation confidence Not enough data

Genome context

JH138056.1: 472688-472768 [-]

Mature stu-miR398b-5p

• Accession: MIMAT0031333
• Description: Solanum tuberosum stu-miR398b-5p mature miRNA
• Sequence: 1 - GAGUGUGCCUUAGAACACAGGU - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR398b-3p

• Accession: MIMAT0031334
• Description: Solanum tuberosum stu-miR398b-3p mature miRNA
• Sequence: 61 - UUGUGUUCUCAGGUCACCCCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233