miRBase entry: stu-MIR156e

Stem-loop stu-MIR156e


Accession
MI0025990
Description
Solanum tuberosum stu-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
9 open access papers mention stu-MIR156e
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugguucuuucauggauuauuccccauguuuaaaagcucugcgugcucacgcucuaucugucaca
(((((((((((.((((((((.((.((((....(((((........)))))......)))).)).)))))))).)))).)))))))..

Structure
--       -    A        a  u    --cuuu     auu 
  UGACAGA AGAG GUGAGCAC ca gguu      caugg   a
  ||||||| |||| |||||||| || ||||      |||||    
  acugucu ucuc cacucgug gu ucga      guacc   u
ac       a    g        c  c    aaauuu     ccu 


Annotation confidence Not enough data
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Genome context
JH137825.1: 159113-159199 [+]

Database links

Mature stu-miR156e

Accession MIMAT0031346
Description Solanum tuberosum stu-miR156e mature miRNA
Sequence 1 - UGACAGAAGAGAGUGAGCAC - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233