miRBase entry: stu-MIR156i

Stem-loop stu-MIR156i


Accession
MI0025994
Description
Solanum tuberosum stu-MIR156i precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
9 open access papers mention stu-MIR156i
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugauguuuucucgcaugauguuuauaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACC
(((((((((((((((((((((((((..((((.(..(((((.......)))))..))))))))))))))))))).)))).)))))))..

Structure
--       -    -              au    u uc     au 
  UGACAGA AGAG AGUGAGCACacaug  guuu c  gcaug  g
  ||||||| |||| ||||||||||||||  |||| |  |||||  u
  ACUGUCU UCUC UCACUCGuguguau  caaa g  cguau  u
CC       A    G              --    - uu     au 


Annotation confidence Not enough data
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Genome context
JH137923.1: 518632-518719 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR156i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR156i-5p

Accession MIMAT0031353
Description Solanum tuberosum stu-miR156i-5p mature miRNA
Sequence 1 - UGACAGAAGAGAGUGAGCAC - 20
Evidence experimental
Illumina [1]

Mature stu-miR156i-3p

Accession MIMAT0031354
Description Solanum tuberosum stu-miR156i-3p mature miRNA
Sequence 67 - GCUCACUGCUCUAUCUGUCACC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233