miRBase entry: aly-MIR173b

Stem-loop aly-MIR173b


Accession
MI0026015
Description
Arabidopsis lyrata aly-MIR173b precursor miRNA


Sequence

191 reads, 6660 reads per million, 1 experiments
ggugacuaaguacuUUCGCUUGCAGAGAGAAAUCACaguggucaaaaguuaaagucucuuuccucuguGAUUCUCUGUGCAAGUGGAAGagcuugcuccc
((.((.(((((.((((((((((((.((((((.((((((.((...((((.........)))))).)))))))))))).)))))))))))).))))).))))

Structure
  u  c     a            G      A      u  uca    uua 
gg ga uaagu cuUUCGCUUGCA AGAGAA UCACag gg   aaag   a
|| || ||||| |||||||||||| |||||| |||||| ||   ||||   a
cc cu guucg GAAGGUGAACGU UCUCUU AGuguc cc   uuuc   g
  -  c     a            G      -      u  ---    ucu 


Annotation confidence High
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Genome context
GL348813.1: 3737-3836 [-]

Database links

Mature aly-miR173b-5p

Accession MIMAT0031388
Description Arabidopsis lyrata aly-miR173b-5p mature miRNA
Sequence 15 - UUCGCUUGCAGAGAGAAAUCAC - 36
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR173b-3p

Accession MIMAT0031389
Description Arabidopsis lyrata aly-miR173b-3p mature miRNA
Sequence 69 - GAUUCUCUGUGCAAGUGGAAG - 89
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103