Stem-loop ppe-MIR160b

Accession

MI0026067

Description

Prunus persica ppe-MIR160b precursor miRNA

Literature search

9 open access papers mention ppe-MIR160b
(24 sentences)

Sequence

36384 reads, 1172.0 reads per million, 20 experiments

ugaacauacgcauagauauacaaaguauauaugUGCCUGGCUCCCUGUAUGCCAuuugcagagucccaccgaacaucgauggccuccguggaugGCGUAUGAGGAGCCAUGCAUAUaaacccauguguuuccuguguguguuuca
.(((((((((((..((.(((((..((...(((((((.(((((((.((((((((((((((.(((..(((.(((...))).))).))).)))))))))))))).))))))).))))))).))...))))).)).)))))))))))..

Structure

-u           ua  u     -aa  aua       C       C              a   uc   c   a 
  gaacauacgca  ga auaca   gu   uaugUGC UGGCUCC UGUAUGCCAuuugc gag  cca cga  
  |||||||||||  || |||||   ||   ||||||| ||||||| |||||||||||||| |||  ||| ||| c
  uuugugugugu  cu ugugu   ca   aUAUACG ACCGAGG GUAUGCGguaggug cuc  ggu gcu  
ac           -c  u     acc  --a       U       A              c   -c   a   a 

Annotation confidence High

Genome context

chrG2: 24579519-24579663 [-]

Mature ppe-miR160b-5p

• Accession: MIMAT0031439
• Description: Prunus persica ppe-miR160b-5p mature miRNA
• Sequence: 34 - UGCCUGGCUCCCUGUAUGCCA - 54
• Evidence: experimental ; Illumina [1]

Mature ppe-miR160b-3p

• Accession: MIMAT0058507
• Description: Prunus persica ppe-miR160b-3p mature miRNA
• Sequence: 95 - GCGUAUGAGGAGCCAUGCAUAU - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149