miRBase entry: ppe-MIR166c

Stem-loop ppe-MIR166c


Accession
MI0026075
Description
Prunus persica ppe-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
7 open access papers mention ppe-MIR166c
(36 sentences)

Sequence

ggaagcauguccuuuugaggggaauguugucuggcacgaggccaccaaucuugguuccuuccaaauuucaauccauaccgaucuuugaucagaauuuacguucuacguacagacgcucagggacuguguauguuaguguccUCGGACCAGGCUUCAUUCCCCucaauucacugcuuuc
(((((((.((....((((((((((((..((((((..(((((.(((.....((((......)))).........(((((((.(((((((........(((((...))))).......))))))).)).)))))...))).)))))..))))))..))))))))))))...)))))))))

Structure
       u  ccuu            uu      ca     c   caaucuugguuccuuccaaauuucaauc     -  a       ucagaauu     u 
ggaagca gu    uugaggggaaug  gucugg  cgagg cac                            cauac cg ucuuuga        uacgu  
||||||| ||    ||||||||||||  ||||||  ||||| |||                            ||||| || |||||||        ||||| c
cuuucgu ca    aacuCCCCUUAC  CGGACC  GCUcc gug                            guaug gu agggacu        augca  
       -  -cuu            UU      AG     u   -------------------------auu     u  c       -cgcagac     u 


Annotation confidence Not enough data
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Genome context
chrG2: 29691966-29692143 [+]

Database links

Mature ppe-miR166c

Accession MIMAT0031447
Description Prunus persica ppe-miR166c mature miRNA
Sequence 142 - UCGGACCAGGCUUCAUUCCCC - 162
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149