miRBase entry: ppe-MIR169c

Stem-loop ppe-MIR169c


Accession
MI0026085
Description
Prunus persica ppe-MIR169c precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
7 open access papers mention ppe-MIR169c
(21 sentences)

Sequence

ucaucuaaagucuugcauguggaaaugaggcguguggugCAGCCAAGGAUGACUUGCCGGcaauacuuagcuugucauucuccaaugcaugcauguuguugugagaaugagcugaucggcaagucgucucuggcuacauuauugccuccuuuucucaugcuagauuuaugauga
(((((..((((((.(((((.(((((.((((((.((((((.(((((.((((((((((((((......(((((...(((((((((((((((....)).))))).))))))))))))))))))))))))))).))))).)))))))))))).))))).))))).))))))..)))))

Structure
     ua      u     u     u      u      C     A              caauac     uug        -     -  u 
ucauc  aagucu gcaug ggaaa gaggcg guggug AGCCA GGAUGACUUGCCGG      uuagc   ucauucuc caaug ca g
|||||  |||||| ||||| ||||| |||||| |||||| ||||| ||||||||||||||      |||||   |||||||| ||||| ||  
aguag  uuuaga cguac cuuuu cuccgu uauuac ucggu ucugcugaacggcu      agucg   aguaagag guugu gu c
     ua      u     u     c      -      a     c              ------     ---        u     u  a 


Annotation confidence Not enough data
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Genome context
chrG3: 24916225-24916398 [-]

Database links

Mature ppe-miR169c

Accession MIMAT0031457
Description Prunus persica ppe-miR169c mature miRNA
Sequence 40 - CAGCCAAGGAUGACUUGCCGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149