Stem-loop ppe-MIR169d

Accession

MI0026086

Description

Prunus persica ppe-MIR169d precursor miRNA

Literature search

7 open access papers mention ppe-MIR169d
(22 sentences)

Sequence

2291 reads, 167.0 reads per million, 20 experiments

gagucuugcaugaagagauggagaguagauaUGAGCCAAGGAUGACUUGCCAaagcauauggccuuuccacuuguuaaucuucugGCAAGCUGUCCUUGGUUCACGuuugcucucuuuucucucaugugagauuc
(((((((((((((.((((.(((((((((((.(((((((((((((.(((((((.((((..(((.....)))..)))).......))))))).))))))))))))).)))))))))))..)))))))))))))))))

Structure

             a    -u           a             A       ------a    ua   c 
gagucuugcauga gaga  ggagaguagau UGAGCCAAGGAUG CUUGCCA       agca  ugg c
||||||||||||| ||||  ||||||||||| ||||||||||||| |||||||       ||||  ||| u
cuuagaguguacu cucu  ucucucguuuG ACUUGGUUCCUGU GAACGgu       uugu  acc u
             -    uu           C             C       cuucuaa    uc   u 

Annotation confidence Medium

Genome context

chrG1: 5662982-5663116 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR169d

Mature ppe-miR169d-5p

• Accession: MIMAT0031458
• Description: Prunus persica ppe-miR169d-5p mature miRNA
• Sequence: 32 - UGAGCCAAGGAUGACUUGCCA - 52
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169d-3p

• Accession: MIMAT0058526
• Description: Prunus persica ppe-miR169d-3p mature miRNA
• Sequence: 86 - GCAAGCUGUCCUUGGUUCACG - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149