Stem-loop ppe-MIR169g

Accession

MI0026088

Description

Prunus persica ppe-MIR169g precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

7 open access papers mention ppe-MIR169g
(21 sentences)

Sequence

gacaggaagggaggccuuacaugaaggaaagagucuuguuuggUAGCCAAGGAUGACUUGCCUGCcuccaguuucaugagcuuuuaccuauaauuaauuaaucugcagcuucuucacauuaauauugugccaaauuccuguuaggcugccaggcagucaccuuggcuaaucucgcaggcucuucucuuucaugcuaggccucuucuuccuuc
...((((((((((((((..(((((((((((((((((.((..(((((((((((.(((((.(((((.....(((((...)))))......................(((((((...((((.......)))).............))))))))))))))))))))))))).)))..)))))))))).)))))))))..))))))).)))))))..

Structure

gac       -       ua         -        u  uu   -        A     U     Ccuccaguuucaugagcuuuuaccuauaauuaauuaaucu       ----------cuu    uu 
   aggaagg gaggccu  caugaagga aagagucu gu  ggU AGCCAAGG UGACU GCCUG                                        gcagcuu             caca  a
   ||||||| |||||||  ||||||||| |||||||| ||  ||| |||||||| ||||| |||||                                        |||||||             ||||  a
   uccuucu cuccgga  guacuuucu uucucgga cg  cua ucgguucc acuga cggac                                        cgucgga             gugu  u
-cu       u       uc         c        -  cu   a        -     -     ----------------------------------------       uuguccuuaaacc    ua 

Annotation confidence Not enough data

Genome context

chrG3: 27020690-27020901 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR169g

Mature ppe-miR169g

• Accession: MIMAT0031460
• Description: Prunus persica ppe-miR169g mature miRNA
• Sequence: 44 - UAGCCAAGGAUGACUUGCCUGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149