miRBase entry: ppe-MIR169i

Stem-loop ppe-MIR169i


Accession
MI0026090
Description
Prunus persica ppe-MIR169i precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
7 open access papers mention ppe-MIR169i
(20 sentences)

Sequence

gcaaacuuaaggaaaugaagagagggucuaacaugaagauaagagucuuguuuggUAGCCAAGGAUGACUUGCCUGCcugccuccuaauuccaagaggacagcucugguuauuuaggguucucaggcagucuccuuuggcuaacuugacagucucuucuuucucaugccagaccuuucucuucuuucuuuguuugu
((((((..(((((((.(((((((((((((..((((((((.(((((.((.(((.(((((((((((..((((.(((((...((((.......(((.(((.....)))))).......))))...)))))))))..)))))))).))).))))).))))).))).)))))..))))).)))))))))))))))))))))

Structure
      uu       u        -     aa     -   u     u  u   u   -        AU    U     Ccu    ccuaauu   a   g 
gcaaac  aaggaaa gaagagag ggucu  cauga aga aagag cu guu ggU AGCCAAGG  GACU GCCUG   gccu       cca gag a
||||||  ||||||| |||||||| |||||  ||||| ||| ||||| || ||| ||| ||||||||  |||| |||||   ||||       ||| ||| c
uguuug  uuucuuu cuucucuu ccaga  guacu uuu uucuc ga cag uca ucgguuuc  cuga cggac   uggg       ggu cuc a
      --       -        u     cc     c   c     u  -   u   a        cu    -     ucu    auuuauu   -   g 


Annotation confidence Not enough data
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Genome context
chrG3: 27020399-27020594 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR169i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR169i

Accession MIMAT0031462
Description Prunus persica ppe-miR169i mature miRNA
Sequence 56 - UAGCCAAGGAUGACUUGCCUGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149