Stem-loop ppe-MIR172b

Accession

MI0026096

Description

Prunus persica ppe-MIR172b precursor miRNA

Literature search

9 open access papers mention ppe-MIR172b
(37 sentences)

Sequence

2462 reads, 1737.0 reads per million, 20 experiments

agucauuguuugcggguGCAGCAUCACCAAGAUUCACAacugaucaagggcacagugacaucaugauguuaugauuuuauuaugacuaugugucuccuaaguuugAGAAUCUUGAUGAUGCUGCAUcagcaauagacgacu
((((.((..((((.((((((((((((.((((((((.(((((......(((((((..(...((((((((.........)))))))))..)))))))....)).))).)))))))).)))))))))))).))))..)).))))

Structure

    a  gu    g            C        A   -  gaucaa       gu aca        uua 
aguc uu  uugc gguGCAGCAUCA CAAGAUUC CAa cu      gggcaca  g   ucaugaug   u
|||| ||  |||| |||||||||||| |||||||| ||| ||      |||||||  |   ||||||||   g
ucag ag  aacg cUACGUCGUAGU GUUCUAAG guu ga      ucugugu  c   aguauuau   a
    c  au    a            A        A   u  --aucc       au ---        uuu 

Annotation confidence High

Genome context

chrG2: 24261182-24261322 [+]

Mature ppe-miR172b-5p

• Accession: MIMAT0058531
• Description: Prunus persica ppe-miR172b-5p mature miRNA
• Sequence: 18 - GCAGCAUCACCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature ppe-miR172b-3p

• Accession: MIMAT0031470
• Description: Prunus persica ppe-miR172b-3p mature miRNA
• Sequence: 106 - AGAAUCUUGAUGAUGCUGCAU - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149