miRBase entry: ppe-MIR395d

Stem-loop ppe-MIR395d


Accession
MI0026106
Description
Prunus persica ppe-MIR395d precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
4 open access papers mention ppe-MIR395d
(15 sentences)

Sequence

auccgugguaauguacuuauuguagaagcugugaugaaaaaagaggaaauauugucaggugucaccgagaguucucuugaccacuucauugggaaauaauucauucugaucaauuauauaucccaCUGAAGUGUUUGGGGGAACUCcugguggcauuugauuuuacaaagaauaacaaagcucuuacaagcuuuccacauauccaccgccauggau
(((((((((...((......(((.(((((((((........((((........((((((((((((((.((((((((((((.(((((((.(((((.((((((.((....)).))))))...))))).))))))).)))))))))))).))))))))))))))...................))))))).))))))..))).....)).)))))))))

Structure
         aau  acuuau   -a      -   augaaaaa    -----------gaaauauu              a            c       u     --a      c  u 
auccguggu   gu      ugu  gaagcu gug        agag                   gucaggugucaccg gaguucucuuga cacuuca uggga   auaauu au c
|||||||||   ||      |||  |||||| |||        ||||                   |||||||||||||| |||||||||||| ||||||| |||||   |||||| ||  
uagguaccg   ca      aca  uuucga cau        ucuc                   uaguuuacgguggu CUCAAGGGGGUU GUGAAGU acccu   uauuaa ua u
         --c  -ccuau   cc      a   --------    gaaacaauaagaaacauuu              c            U       C     aua      c  g 


Annotation confidence Not enough data
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Genome context
chrG1: 27764041-27764256 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from ppe-MIR395d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR395d

Accession MIMAT0031482
Description Prunus persica ppe-miR395d mature miRNA
Sequence 126 - CUGAAGUGUUUGGGGGAACUC - 146
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149