miRBase entry: ppe-MIR395n

Stem-loop ppe-MIR395n


Accession
MI0026116
Description
Prunus persica ppe-MIR395n precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention ppe-MIR395n
(13 sentences)

Sequence

ucaggugucaccuagaguucucuugaccacuucauugggaaauagucuucuuucgacuauacauucuaCUGAAGUGUUUGGGGGAACUCuagguggcauuuga
((((((((((((((((((((((((((.(((((((.(((((.((((((.......))))))...))))).))))))).))))))))))))))))))))))))))

Structure
                          c       u     --a      uu 
ucaggugucaccuagaguucucuuga cacuuca uggga   auaguc  c
|||||||||||||||||||||||||| ||||||| |||||   ||||||  u
aguuuacgguggauCUCAAGGGGGUU GUGAAGU aucuu   uaucag  u
                          U       C     aca      cu 


Annotation confidence Not enough data
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Genome context
chrG1: 27764648-27764750 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from ppe-MIR395n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR395n

Accession MIMAT0031492
Description Prunus persica ppe-miR395n mature miRNA
Sequence 69 - CUGAAGUGUUUGGGGGAACUC - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149