Stem-loop ppe-MIR395o

Accession

MI0026117

Description

Prunus persica ppe-MIR395o precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395o
(13 sentences)

Sequence

cuagaGUUCCCUCAAACACUUCAUUggagauuauaugccccucucuacuuucuaucuacugaaguguuuuuggggacccuuag
..((.((((((..((((((((((.((((..........................)))).))))))))))..)))))).))...

Structure

-cu  a      UC          U    gauuauaugccc 
   ag GUUCCC  AAACACUUCA Ugga            c
   || ||||||  |||||||||| ||||             
   uc cagggg  uuugugaagu aucu            u
gau  c      uu          c    aucuuucaucuc 

Annotation confidence Not enough data

Genome context

chrG1: 27768992-27769074 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppe-MIR395o

Mature ppe-miR395o

• Accession: MIMAT0031493
• Description: Prunus persica ppe-miR395o mature miRNA
• Sequence: 6 - GUUCCCUCAAACACUUCAUU - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149