Stem-loop ppe-MIR2111b

Accession

MI0026142

Description

Prunus persica ppe-MIR2111b precursor miRNA

Gene family

MIPF0000754; MIR2111

Sequence

uuagcucuucauaccuugguagaacuguagaaguauacugaucgaucguauuggguaaggaucgggUAAUCUGCAUCCUGAGGUUUAgaucagcuuuguuuuguuguuucuagcccucggggugcagauuaccucguccucacugccaaugcaagacuuguuagcuaguacuaauauaucaaaccaaugaagcuaa
.(((((..((((....((((.((..((((..(((((.((((.((((((((((((((.(((((.((((((((((((((((((((.(((((.((((........))))..))))).)))))))))))))))))))).))))).))..)))))))..)).)))))))...)))))..))))))..))))))))))))).

Structure

u     cu    accu    -a  ac    ga     --a    u   -  --       --  a     c                    U     -u    uuu 
 uagcu  ucau    uggu  ga  ugua  aguau   cuga cga uc  guauugg  gu aggau gggUAAUCUGCAUCCUGAGG UUAga  cagc   g
 |||||  ||||    ||||  ||  ||||  |||||   |||| ||| ||  |||||||  || ||||| |||||||||||||||||||| |||||  ||||    
 aucga  agua    acca  cu  auau  ucaug   gauu guu ag  cguaacc  ca uccug uccauuagacguggggcucc gaucu  guug   u
a     --    ----    aa  --    aa     auc    -   c  aa       gu  c     c                    c     uu    uuu 

Annotation confidence Not enough data

Genome context

chrG4: 5129138-5129333 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR2111b

Mature ppe-miR2111b

• Accession: MIMAT0031518
• Description: Prunus persica ppe-miR2111b mature miRNA
• Sequence: 67 - UAAUCUGCAUCCUGAGGUUUA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149