miRBase entry: ppe-MIR7122a

Stem-loop ppe-MIR7122a


Accession
MI0026148
Description
Prunus persica ppe-MIR7122a precursor miRNA
Gene family
MIPF0000771; MIR1509

Literature search
1 open access papers mention ppe-MIR7122a
(1 sentences)

Sequence

uucaucuuuugcaaaaucaaucgaucaaaggguucauuccauuuuuUUAUACAAUGAAAUCACGGCCGagaaaagaacagaagauucuuucugacucucucucucuccucucuGCCGUGUUUCUUUGUAUAAAGagauguacuggacccguucaauccuuuugauuugacagauugga
((((...((((..(((((((..(((..(((((((((...(((((((((((((((.((((.((((((.((((..(((..((((((.((.....)).))).))).)))..)))).)))))))))).)))))))))))))))...))))))).))..)))...)))))))..)))).))))

Structure
    ucu    ca       -uc   ca  -       uuc               U    U      C    aa   ac   -   u  u 
uuca   uuug  aaaucaa   gau  aa ggguuca   cauuuuuUUAUACAA GAAA CACGGC Gaga  aga  aga aga uc u
||||   ||||  |||||||   |||  || |||||||   ||||||||||||||| |||| |||||| ||||  |||  ||| ||| || u
aggu   agac  uuuaguu   cua  uu cccaggu   guagaGAAAUAUGUU CUUU GUGCCG cucu  ucu  ucu ucu ag c
    --u    ag       uuc   ac  g       cau               U    -      u    cc   -c   c   c  u 


Annotation confidence Not enough data
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Genome context
chrG1: 2253872-2254049 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR7122a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR7122a-5p

Accession MIMAT0031527
Description Prunus persica ppe-miR7122a-5p mature miRNA
Sequence 47 - UUAUACAAUGAAAUCACGGCCG - 68
Evidence experimental
Illumina [1]

Mature ppe-miR7122a-3p

Accession MIMAT0031528
Description Prunus persica ppe-miR7122a-3p mature miRNA
Sequence 114 - GCCGUGUUUCUUUGUAUAAAG - 134
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149