miRBase entry: bbe-mir-1

Stem-loop bbe-mir-1


Accession
MI0026185
Description
Branchiostoma belcheri bbe-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention bbe-mir-1
(4 sentences)

Sequence

ccaggccuguuaagcauAAGUACUUCUUUACUAUCCCAUacugaacucaauuguaUGGAAUGUAAAGAAGUAUGUAUgguuagcaggcuaccacgu
...((((((((((.((((.((((((((((((.((.((((((...........)))))).)))))))))))))).)))).)))))))))).......

Structure
----cca          g    A            U  C      ugaa 
       ggccuguuaa cauA GUACUUCUUUAC AU CCAUac    c
       |||||||||| |||| |||||||||||| || ||||||    u
       ucggacgauu gUAU UAUGAAGAAAUG UA GGUaug    c
ugcacca          g    G            -  A      uuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bbe-miR-1-3p

Accession MIMAT0031591
Description Branchiostoma belcheri bbe-miR-1-3p mature miRNA
Sequence 18 - AAGUACUUCUUUACUAUCCCAU - 39
Evidence not_experimental

Mature bbe-miR-1-5p

Accession MIMAT0031592
Description Branchiostoma belcheri bbe-miR-1-5p mature miRNA
Sequence 56 - UGGAAUGUAAAGAAGUAUGUAU - 77
Evidence not_experimental

References

  1. PubMed ID: 23335747
    Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
    "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
    "J Immunol (2013) 190:1491-1500