Stem-loop bbe-mir-200b

Accession

MI0026196

Description

Branchiostoma belcheri bbe-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

1 open access papers mention bbe-mir-200b
(1 sentences)

Sequence

acaguuuaggaucucggcaacauCUUACCAGGCAGCAUUUAGUuuuugaaaggaauacUAAUACUGUCUGGUAAUGAUGUUggugggguucagacagu
...((((.((((((((.((((((((((((((((((...(((((.(((.....))).)))))..))))))))))).))))))).))))))))))))...

Structure

aca    a        g       -           CAU     u   g 
   guuu ggaucucg caacauC UUACCAGGCAG   UUAGU uuu a
   |||| |||||||| ||||||| |||||||||||   ||||| ||| a
   caga cuuggggu gUUGUAG AAUGGUCUGUC   AAUca aag a
uga    -        g       U           -AU     u   g 

Annotation confidence Not enough data

Genome context

Unknown

Mature bbe-miR-200b-3p

• Accession: MIMAT0031608
• Description: Branchiostoma belcheri bbe-miR-200b-3p mature miRNA
• Sequence: 24 - CUUACCAGGCAGCAUUUAGU - 43
• Evidence: not_experimental

Mature bbe-miR-200b-5p

• Accession: MIMAT0031609
• Description: Branchiostoma belcheri bbe-miR-200b-5p mature miRNA
• Sequence: 59 - UAAUACUGUCUGGUAAUGAUGUU - 81
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500