miRBase entry: bbe-mir-92c

Stem-loop bbe-mir-92c


Accession
MI0026275
Description
Branchiostoma belcheri bbe-mir-92c precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

ugaauggauagggaggggguuuugauugaguguuuuuguaaaauuuagcgguuuuguuuuuggcgggaaggucgggacaaggaacaauguuccccacugaUAUUGCACUUGUCCCGGCUCGuccgcugccgccaucuugcuucaaacuugacuucggcacucuuuuuacuucaagccacccguucugcagccuuccucuuc
.(((.((.(((((.((((((((.((..(((((((((((.........(((((.........((((((..((((((((((((...(((((((.......)))))))..))))))))))))..)))))))))))..........)))).........)))))))........))))))).))).)))))...)))))......

Structure
-----u   u  --a     a   -     u  ------uu       ---------    -uaaaauuua     uuuguuuuu      aa            gaa       cc 
      gaa gg   uaggg ggg gguuu ga        gaguguu         uuug          gcggu         ggcggg  ggucgggacaag   caauguu  c
      ||| ||   ||||| ||| ||||| ||        |||||||         ||||          |||||         ||||||  ||||||||||||   |||||||  c
      cuu cc   gucuu ccc ccgaa cu        cucacgg         aaac          cgccg         ucgccu  UCGGCCCUGUUC   GUUAUag  a
cuucuc   -  gac     g   a     -  ucauuuuu       cuucaguuc    uucguucuac     ---------      GC            -AC       uc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bbe-miR-92c-3p

Accession MIMAT0031723
Description Branchiostoma belcheri bbe-miR-92c-3p mature miRNA
Sequence 101 - UAUUGCACUUGUCCCGGCUCG - 121
Evidence not_experimental

References

  1. PubMed ID: 23335747
    Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
    "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
    "J Immunol (2013) 190:1491-1500