miRBase entry: bbe-mir-96

Stem-loop bbe-mir-96


Accession
MI0026278
Description
Branchiostoma belcheri bbe-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
1 open access papers mention bbe-mir-96
(4 sentences)

Sequence

ccugccucuuucuugcucugUUUGGCACUAGCACAUUUUUGCUgggcagguguguaggCCAAAAUUGUUAGUGCCAAAUacagccugaaagacggacuuac
....((((((((..(((.(((((((((((((((.(((((.(((..(((....))).))).)))))))))))))))))))).)))..)))))).))......

Structure
--ccug  -      uu   c               C     U   gg   g 
      cc ucuuuc  gcu ugUUUGGCACUAGCA AUUUU GCU  gca g
      || ||||||  ||| ||||||||||||||| ||||| |||  |||  
      gg agaaag  cga aUAAACCGUGAUUGU UAAAA Cgg  ugu u
cauuca  c      uc   c               -     C   -a   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bbe-miR-96-5p

Accession MIMAT0031728
Description Branchiostoma belcheri bbe-miR-96-5p mature miRNA
Sequence 21 - UUUGGCACUAGCACAUUUUUGCU - 43
Evidence not_experimental

Mature bbe-miR-96-3p

Accession MIMAT0031729
Description Branchiostoma belcheri bbe-miR-96-3p mature miRNA
Sequence 59 - CCAAAAUUGUUAGUGCCAAAU - 79
Evidence not_experimental

References

  1. PubMed ID: 23335747
    Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
    "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
    "J Immunol (2013) 190:1491-1500