miRBase entry: bma-mir-252

Stem-loop bma-mir-252


Accession
MI0026293
Description
Brugia malayi bma-mir-252 precursor miRNA
Gene family
MIPF0000285; mir-252

Literature search
1 open access papers mention bma-mir-252
(1 sentences)

Sequence

acaauccucaaggauaagucauuCUAAGUAGUAGUGCCGCAGGUAAcaacaauugaguuuaccuguucucugcuacuuaacaugaccauccaugcuugaacacuu
.......(((((.((..(((((..((((((((((....((((((((..((......))))))))))...))))))))))..))))).....)).)))))......

Structure
acaaucc     g  ---aa     uC          UGCC        ca  aa 
       ucaag au     gucau  UAAGUAGUAG    GCAGGUAA  ac  u
       ||||| ||     |||||  ||||||||||    ||||||||  ||   
       aguuc ua     cagua  auucaucguc    uguccauu  ug  u
-uucaca     g  ccuac     ca          -ucu        --  ag 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold3: 1319133-1319237 [+]

Database links

Mature bma-miR-252

Accession MIMAT0031744
Description Brugia malayi bma-miR-252 mature miRNA
Sequence 24 - CUAAGUAGUAGUGCCGCAGGUAA - 46
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498