miRBase entry: bma-mir-36a-1

Stem-loop bma-mir-36a-1


Accession
MI0026300
Description
Brugia malayi bma-mir-36a-1 precursor miRNA
Gene family
MIPF0001664; mir-36_2

Literature search
1 open access papers mention bma-mir-36a-1
(12 sentences)

Sequence

auggugcuucaggaugugcaucgugguugauguaguuaaaauucucucaUCACCGGGUGCACAUUCGGUcauaccaucaug
((((((.....(((((((((((.((((.((((.((........))..))))))))))))))))))).....))))))....

Structure
----      cuuca           g    u    -u  uua 
    auggug     ggaugugcauc uggu gaug  ag   a
    ||||||     ||||||||||| |||| ||||  ||    
    uaccau     CUUACACGUGG GCCA CUac  uc   a
guac      acUGG           -    -    uc  uua 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold337: 15957-16037 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-36a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-36a

Accession MIMAT0031749
Description Brugia malayi bma-miR-36a mature miRNA
Sequence 50 - UCACCGGGUGCACAUUCGGU - 69
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498