miRBase entry: bma-mir-5363

Stem-loop bma-mir-5363


Accession
MI0026309
Description
Brugia malayi bma-mir-5363 precursor miRNA


Sequence

uuuccacauaagccaugcguugAUGGGCAACGUUUCAAACCGUGUugcccgucugaaguuaaACGGUUUGAAUGUUGUCCAACAuugcuacgcuuuaucucuuucuc
.........((((...(((.((.(((((((((((.((((((((...((.........))...))))))))))))))))))).)).)))...))))............

Structure
---uuuccacau    cau   u  A           U        GUu  ccg 
            aagc   gcg ug UGGGCAACGUU CAAACCGU   gc   u
            ||||   ||| || ||||||||||| ||||||||   ||   c
            uucg   cgu AC ACCUGUUGUAA GUUUGGCA   ug   u
cucuuucucuau    cau   u  A           -        aau  aag 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold2: 1202001-1202107 [-]

Database links

Mature bma-miR-5363-5p

Accession MIMAT0031754
Description Brugia malayi bma-miR-5363-5p mature miRNA
Sequence 23 - AUGGGCAACGUUUCAAACCGUGU - 45
Evidence experimental
Illumina [2]

Mature bma-miR-5363-3p

Accession MIMAT0037485
Description Brugia malayi bma-miR-5363-3p mature miRNA
Sequence 63 - ACGGUUUGAAUGUUGUCCAACA - 84
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498