miRBase entry: bma-mir-5366

Stem-loop bma-mir-5366


Accession
MI0026313
Description
Brugia malayi bma-mir-5366 precursor miRNA
Gene family
MIPF0001738; mir-5366


Sequence

uuauaaaauagccauaagcccgUAAAUGCACUAUGUUGCUAAUUaugugcguuuggaaaUUAGCAGCACGGCGCAUUUGCGcgcaaucuggcaaugccuauuaauac
..........((((...((.(((((((((.((.(((((((((((.............))))))))))).)).))))))))).))....))))...............

Structure
-----uuauaaaaua    -uaa  c         A  A           augug 
               gcca    gc cgUAAAUGC CU UGUUGCUAAUU     c
               ||||    || ||||||||| || |||||||||||     g
               cggu    cg GCGUUUACG GG ACGACGAUUaa     u
cauaauuauccguaa    cuaa  c         C  C           agguu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold1273: 2018-2124 [-]

Database links

Mature bma-miR-5366-3p

Accession MIMAT0031758
Description Brugia malayi bma-miR-5366-3p mature miRNA
Sequence 60 - UUAGCAGCACGGCGCAUUUGCG - 81
Evidence experimental
Illumina [2]

Mature bma-miR-5366-5p

Accession MIMAT0037486
Description Brugia malayi bma-miR-5366-5p mature miRNA
Sequence 23 - UAAAUGCACUAUGUUGCUAAUU - 44
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498