miRBase entry: hbv-mir-B2

Stem-loop hbv-mir-B2

Accession

MI0026319

Description

Herpes B virus hbv-mir-B2 precursor miRNA

Sequence

cgcccgucucuccgcgcccaggggccgcggcucgaccgcaCGGCCGGGAACGAGAGACGGCGGgcg
((((((((((((((..(((...((((((((.....))))..)))))))..)).)))).))))))))

Structure

        -    -  cg   agg    --    c 
cgcccguc ucuc cg  ccc   ggcc  gcgg u
|||||||| |||| ||  |||   ||||  |||| c
gcgGGCGG AGAG GC  GGG   CCGG  cgcc g
        C    A  AA   ---    Ca    a

Annotation confidence Not enough data

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Genome context

NC_004812: 62049-62114 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hbv-mir-B2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hbv-miR-B2-3p

Accession	MIMAT0031763
Description	Herpes B virus hbv-miR-B2-3p mature miRNA
Sequence	41 - CGGCCGGGAACGAGAGACGGCGG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 21543500
Identification and expression analysis of herpes B virus-encoded small RNAs
"Amen MA, Griffiths A"
"J Virol (2011) 85:7296-7311