miRBase entry: hbv-mir-B8

Stem-loop hbv-mir-B8


Accession
MI0026322
Description
Herpes B virus hbv-mir-B8 precursor miRNA


Sequence

cccggcUGUGGAGGCCUAGGGGAGCCCGGcgugcccgcccccGAUCUUCACUAGGCCUGCCCGGCcggg
((((((((.((((((((((.((((..(((((....))))...)..)))).)))))))).))))))))))

Structure
        U  -        G    CC ---    u 
cccggcUG GG AGGCCUAG GGAG  C   GGcg g
|||||||| || |||||||| ||||  |   ||||  
gggcCGGC CC UCCGGAUC CUUC  G   ccgc c
        -  G        A    UA ccc    c 


Annotation confidence Not enough data
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Genome context
NC_004812: 126586-126654 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from hbv-mir-B8
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hbv-miR-B8-5p

Accession MIMAT0031767
Description Herpes B virus hbv-miR-B8-5p mature miRNA
Sequence 7 - UGUGGAGGCCUAGGGGAGCCCGG - 29
Evidence experimental
Illumina [1]

Mature hbv-miR-B8-3p

Accession MIMAT0031768
Description Herpes B virus hbv-miR-B8-3p mature miRNA
Sequence 43 - GAUCUUCACUAGGCCUGCCCGGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21543500
    Identification and expression analysis of herpes B virus-encoded small RNAs
    "Amen MA, Griffiths A"
    "J Virol (2011) 85:7296-7311