Stem-loop sequence hbv-mir-B19

AccessionMI0026323 (change log)
DescriptionHerpes B virus miR-B19 stem-loop
Stem-loop
   u      -   c         cg     c uc 
5'  uggugg gcg acucgaucc  gcugu c  c
    |||||| ||| |||||||||  ||||| |  c
3'  gccauc cgc ugggcuagg  cggcg g  c
   g      g   c         --     c cu 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Refseq:NC_004812) Overlapping transcripts
NC_004812: 600-663 [-]
intergenic
NC_004812: 125195-125258 [+]
intergenic
Clustered miRNAs
< 10kb from hbv-mir-B19
hbv-mir-B20NC_004812: 125472-125560 [+]
hbv-mir-B26NC_004812: 125347-125404 [+]
hbv-mir-B19NC_004812: 125195-125258 [+]
hbv-mir-B22NC_004812: 118383-118456 [+]
hbv-mir-B14RCNC_004812: 118383-118455 [-]
hbv-mir-B14RCNC_004812: 7403-7475 [+]
hbv-mir-B22NC_004812: 7402-7475 [-]
hbv-mir-B19NC_004812: 600-663 [-]
hbv-mir-B26NC_004812: 454-511 [-]
hbv-mir-B20NC_004812: 298-386 [-]
Database links

Mature sequence hbv-miR-B19-5p

Accession MIMAT0031769
Sequence

4 - 

gugggcgcacucgaucccggcu

 - 25

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:21543500 "Identification and expression analysis of herpes B virus-encoded small RNAs" Amen MA, Griffiths A J Virol. 85:7296-7311(2011).