Stem-loop cpa-MIR156a

Accession

MI0026328

Description

Carica papaya cpa-MIR156a precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

2 open access papers mention cpa-MIR156a
(24 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacagagacaguuguauaaaguuauauuucugcacuugcgugcucacuucucuuucugucacc
((((((((((((((((((((.(((...(((..(((((....)))))..)))...))).)))))))).)))).))))))))..

Structure

--        -    -        a   aga   uu     a 
  UGACAGAA GAGA GUGAGCAC cag   cag  guaua a
  |||||||| |||| |||||||| |||   |||  |||||  
  acugucuu cucu cacucgug guu   guc  uauau g
cc        u    u        c   cac   uu     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR156a

• Accession: MIMAT0031774
• Description: Carica papaya cpa-miR156a mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682