Stem-loop cpa-MIR156c

Accession

MI0026330

Description

Carica papaya cpa-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

2 open access papers mention cpa-MIR156c
(17 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugguucuuucuugcaugcuggguucaugcuugaagcucugcgugcucgcucucuaucugucacc
((((((((((((((((((((.((.(((...(((..(((((.......)))))..)))))).)).))))))))))))).)))))))..

Structure

--       -             a  u   ucu   uu     cu 
  UGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug  g
  ||||||| ||||||||||||| || |||   |||  |||||  g
  acugucu ucucucgcucgug gu ucg   aag  cguac  g
cc       a             c  c   ---   uu     uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR156c

• Accession: MIMAT0031776
• Description: Carica papaya cpa-miR156c mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682