Stem-loop cpa-MIR156d

Accession

MI0026331

Description

Carica papaya cpa-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

2 open access papers mention cpa-MIR156d
(17 sentences)

Sequence

UGACAGAAGAGAGUGAGCACccauggcguuuuucuugcauggauguuccaugcucgaagcucugcgugcucucucucucucugucauc
(((((((((((((.((((((.((.(((....(((..(((((((...)))))))..)))))).)).)))))).)))))).)))))))..

Structure

--       -      U      c  u   guuu   uu       u 
  UGACAGA AGAGAG GAGCAC ca ggc    uuc  gcaugga  
  ||||||| |||||| |||||| || |||    |||  ||||||| g
  acugucu ucucuc cucgug gu ucg    aag  cguaccu  
cu       c      u      c  c   ----   cu       u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR156d

• Accession: MIMAT0031777
• Description: Carica papaya cpa-miR156d mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682