miRBase entry: cpa-MIR159a

Stem-loop cpa-MIR159a


Accession
MI0026334
Description
Carica papaya cpa-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
2 open access papers mention cpa-MIR159a
(10 sentences)

Sequence

gagcuccuugaaguccaauagaggauuuugcaggguugauugagcugccgagcuauggauuccacagcccuacccgaaguuauacuuuuucuggguaggcuugcgguuugcauaucucaggagcugcauuacccuaagcuuaauccuugUUUGGAUUGAAGGGAGCUCUAg
(((((((((..(((((((..(((((((..(((((((.(((..((((.(.(((.((((.(..((.(((.(((((((((((........)))).))))))).))).))..).)))).))).).))))..))))))))..))..)))))))..)))))))..)))))))))...

Structure
---         ga       ua       uu  --     u   ug    g c   c    g uu  a   c       -    uua 
   gagcuccuu  aguccaa  gaggauu  gc  agggu gau  agcu c gag uaug a  cc cag ccuaccc gaag   u
   |||||||||  |||||||  |||||||  ||  ||||| |||  |||| | ||| |||| |  || ||| ||||||| ||||    
   CUCGAGGGA  UUAGGUU  uuccuaa  cg  uccca uua  ucga g cuc auac u  gg guu ggauggg cuuu   a
gAU         AG       Ug       uu  aa     -   cg    g a   u    g uu  c   c       u    uuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR159a

Accession MIMAT0031780
Description Carica papaya cpa-miR159a mature miRNA
Sequence 150 - UUUGGAUUGAAGGGAGCUCUA - 170
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682