Stem-loop cpa-MIR160b

Accession

MI0026338

Description

Carica papaya cpa-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

3 open access papers mention cpa-MIR160b
(5 sentences)

Sequence

UGCCUGGCUCCCUGUAUGCCAcaagcacaacccgaucuuuccgaugauuggccggugccgguggcgugcgaggagccaagcaug
(((.(((((((.((((((((((..((((...((((((........))))))...))))..)))))))))).))))))).)))..

Structure

--   C       C          aa    aac      uuu 
  UGC UGGCUCC UGUAUGCCAc  gcac   ccgauc   c
  ||| ||||||| ||||||||||  ||||   ||||||    
  acg accgagg gcgugcggug  cgug   gguuag   c
gu   a       a          gc    gcc      uag 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR160b

• Accession: MIMAT0031784
• Description: Carica papaya cpa-miR160b mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682