miRBase entry: cpa-MIR160c

Stem-loop cpa-MIR160c


Accession
MI0026339
Description
Carica papaya cpa-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention cpa-MIR160c
(5 sentences)

Sequence

UGCCUGGCUCCCUGUAUGCCAuuugcagagcccaccgagcaucgcuggccuccguggaugGCGUAUGAGGAGCCAUGCAUA
(((.(((((((.((((((((((((((.(((.(((.(((...))).))).))).)))))))))))))).))))))).)))..

Structure
--   C       C              a   c   c   g 
  UGC UGGCUCC UGUAUGCCAuuugc gag cca cga  
  ||| ||||||| |||||||||||||| ||| ||| ||| c
  ACG ACCGAGG GUAUGCGguaggug cuc ggu gcu  
AU   U       A              c   c   c   a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature cpa-miR160c-5p

Accession MIMAT0031785
Description Carica papaya cpa-miR160c-5p mature miRNA
Sequence 1 - UGCCUGGCUCCCUGUAUGCCA - 21
Evidence experimental
Illumina [1]

Mature cpa-miR160c-3p

Accession MIMAT0031786
Description Carica papaya cpa-miR160c-3p mature miRNA
Sequence 61 - GCGUAUGAGGAGCCAUGCAUA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682