Stem-loop cpa-MIR166a

Accession

MI0026348

Description

Carica papaya cpa-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention cpa-MIR166a
(8 sentences)

Sequence

ggaauguugucuggcucgaggacauuuaauucuaugcauccauccauccauccauuuacaucuccagaucuggacuacuuggauuaauuuugaguuagugucgUCGGACCAGGCUUCAUUCCCC
((((((..((((((.((((.((((((.(((((.....(((((....((((...((((........)))).)))).....))))).......))))))))))).)))).))))))..))))))..

Structure

--      uu      c    g      u     --uaugc     -ucca    ucc    aca 
  ggaaug  gucugg ucga gacauu aauuc       aucca     ucca   auuu   u
  ||||||  |||||| |||| |||||| |||||       |||||     ||||   ||||    
  CCUUAC  CGGACC GGCU cuguga uugag       uaggu     aggu   uaga   c
CC      UU      A    g      -     uuuuaau     ucauc    --c    ccu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR166a

• Accession: MIMAT0031796
• Description: Carica papaya cpa-miR166a mature miRNA
• Sequence: 104 - UCGGACCAGGCUUCAUUCCCC - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682