Stem-loop cpa-MIR166d

Accession

MI0026351

Description

Carica papaya cpa-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention cpa-MIR166d
(8 sentences)

Sequence

ggaauguuguuuggcucgaggucaucugugauagccucugaaauuuucuuaggggccuuuuuacuuucccggaaaauuucugcaucuacauaccucuaguugaucUCGGACCAGGCUUCAUUCCCG
((((((..((((((.(((((((((.(((((.(((.....((((((((((..((((...........)))))))))))))).....))))))......)).))))))))).))))))..))))))..

Structure

--      uu      c         u  ------   a   ccucu          ua    ccuu 
  ggaaug  guuugg ucgagguca cu      gug uag     gaaauuuucu  gggg    u
  ||||||  |||||| ||||||||| ||      ||| |||     ||||||||||  ||||    u
  CCUUAC  CGGACC GGCUcuagu ga      uac auc     cuuuaaaagg  cccu    u
GC      UU      A         u  ucucca   -   uacgu          --    uuca 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR166d

• Accession: MIMAT0031799
• Description: Carica papaya cpa-miR166d mature miRNA
• Sequence: 106 - UCGGACCAGGCUUCAUUCCCG - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682