miRBase entry: cpa-MIR167a

Stem-loop cpa-MIR167a


Accession
MI0026353
Description
Carica papaya cpa-MIR167a precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention cpa-MIR167a
(6 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUAgcuagcuuuaaugguuauagaagaaaugauaacccuaguuaggucaugcucugacagccucacu
(((.(((((.((((((((((((((((.......((((((..........))))))))))))))))))))))..).)))).)))..

Structure
--   A    - -C                cuuuaau      agaa 
  UGA GCUG C  AGCAUGAUCUAgcuag       gguuau    g
  ||| |||| |  ||||||||||||||||       ||||||     
  acu cgac g  ucguacuggauugauc       ccaaua    a
uc   c    a uc                -------      guaa 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature cpa-miR167a

Accession MIMAT0031801
Description Carica papaya cpa-miR167a mature miRNA
Sequence 1 - UGAAGCUGCCAGCAUGAUCUA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682