miRBase entry: cpa-MIR171b

Stem-loop cpa-MIR171b


Accession
MI0026359
Description
Carica papaya cpa-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
1 open access papers mention cpa-MIR171b
(1 sentences)

Sequence

uauuggugcgguucaaucggagagcauuacucuaaaguguagagacguguuguuUGAUUGAGCCGUGCCAAUAUC
(((((((((((((((((((((.(((((..(((((.....)))))..))))).)))))))))))))))))))))..

Structure
--                     g     ua     a 
  uauuggugcgguucaaucgga agcau  cucua a
  ||||||||||||||||||||| |||||  ||||| g
  AUAACCGUGCCGAGUUAGUuu uugug  gagau u
CU                     g     ca     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR171b

Accession MIMAT0031807
Description Carica papaya cpa-miR171b mature miRNA
Sequence 55 - UGAUUGAGCCGUGCCAAUAUC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682