miRBase entry: cpa-MIR171c

Stem-loop cpa-MIR171c


Accession
MI0026360
Description
Carica papaya cpa-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
1 open access papers mention cpa-MIR171c
(1 sentences)

Sequence

uguuggcaugguucaaucaaauuaaagcucucauuaauggcuggagauauucauguugaguucuuuuagucUGAUUGAGCCGUGCCAAUAUC
(((((((((((((((((((.(((((((..((((...((((.((....)).))))..))))..).)))))).)))))))))))))))))))..

Structure
--                   a      - cu    uua    c  g 
  uguuggcaugguucaauca auuaaa g  cuca   augg ug a
  ||||||||||||||||||| |||||| |  ||||   |||| ||  
  AUAACCGUGCCGAGUUAGU ugauuu c  gagu   uacu au g
CU                   c      u uu    -ug    u  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR171c

Accession MIMAT0031808
Description Carica papaya cpa-miR171c mature miRNA
Sequence 72 - UGAUUGAGCCGUGCCAAUAUC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682