miRBase entry: cpa-MIR172a

Stem-loop cpa-MIR172a


Accession
MI0026362
Description
Carica papaya cpa-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
2 open access papers mention cpa-MIR172a
(7 sentences)

Sequence

gagcaucaucaagauucacaaaauuaaacacauuagggcuaguagugugggguuugugguggugggugacggugauggccccuucugcucuuuuuuuuuucaguggucccguugcuuauuucacugcaacacccuuggcucucucucuuugauuauGGGAAUCUUGAUGAUGCUGCA
.((((((((((((((((.((.(((((((......(((((((.......((((((((((((((((((((((((.(((.((.......................)).))))))))))))))..)))))))).)))))))))))).....))))))).)).))))))))))))))))...

Structure
--g                a  a       cacauu       guagugu     -        --           u   g  cccuucugcu 
   agcaucaucaagauuc ca aauuaaa      agggcua       ggggu uuguggug  gugggugacgg gau gc          c
   |||||||||||||||| || |||||||      |||||||       ||||| ||||||||  ||||||||||| ||| ||          u
   UCGUAGUAGUUCUAAG Gu uuaguuu      ucucggu       uccca aacgucac  uauucguugcc cug ug          u
ACG                G  a       -cucuc       -------     c        uu           -   g  acuuuuuuuu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature cpa-miR172a

Accession MIMAT0031810
Description Carica papaya cpa-miR172a mature miRNA
Sequence 157 - GGGAAUCUUGAUGAUGCUGCA - 177
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682