Stem-loop cpa-MIR172b

Accession

MI0026363

Description

Carica papaya cpa-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

2 open access papers mention cpa-MIR172b
(7 sentences)

Sequence

cggcaucaucaagauucacaacaaaacuuuugugaugauaagcucuuuuuaaucgaucgacuugaucaaaagcuucucuccgaaauGGGAAUCUUGAUGAUGCUGCA
(((((((((((((((((.((.......(((((.((.((.(((((...(((.(((((.....))))).)))))))).))))))))))).)))))))))))))))))..

Structure

--                 a  acaaaac     u  u  u     cuu   a     u 
  cggcaucaucaagauuc ca       uuuug ga ga aagcu   uuu aucga c
  ||||||||||||||||| ||       ||||| || || |||||   ||| ||||| g
  GUCGUAGUAGUUCUAAG Gu       aaagc cu cu uucga   aaa uaguu a
AC                 G  -------     -  -  c     ---   c     c 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR172b

• Accession: MIMAT0031811
• Description: Carica papaya cpa-miR172b mature miRNA
• Sequence: 87 - GGGAAUCUUGAUGAUGCUGCA - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682